Course overview

Computational Neuroscience is a rapidly evolving field whose methods and techniques are critical for understanding and modelling the brain, and also for designing and interpreting experiments. Mathematical modelling is an essential tool to cut through the vast complexity of neurobiological systems and their many interacting elements.

The course teaches the central ideas, methods, and practices of modern computational neuroscience through a combination of lectures and hands-on project work. During the course’s mornings, distinguished international faculty deliver lectures on topics across the entire breadth of experimental and computational neuroscience. For the remainder of the time, students work on research projects in teams of 2 to 3 people under close supervision of expert tutors and faculty. Research projects are proposed by faculty before the course, and include the modeling of neurons, neural systems, and behavior, the analysis of state-of-the-art neural data (behavioral data, multi-electrode recordings, calcium imaging data, connectomics data, etc.), and the development of theories to explain experimental observations.


Brent Doiron

Course Director

University of Chicago, 


Maria Geffen


University of Pennsylvania, 


Julijana Gjorgjieva


Max Planck Institute for Brain Research,


Joe Paton


Champalimaud Research,



Alex Cayco-Gajic – École Normale Supérieure, France

Ann Hermundstad – Janelia Research Campus, USA

Gilles Laurent Max Planck – Institute for Brain Research, Germany

Máté Lengyel – University of Cambridge, UK

Ashok Litwin-Kumar – Columbia University, USA

Christian Machens – Champalimaud Research, Portugal

Olivier Marre – Vision Institute, France

Ken Miller – Columbia University, USA

Mala Murthy – Princeton Neuroscience Institute, USA

Srdjan Ostojic – École Normale Supérieure, France

Anne-Marie – Oswald University of Chicago, USA

Alfonso Renart – Champalimaud Research, Portugal

Nathalie Rochefort – University of Edinburgh, UK

Vanessa Ruta – Rockefeller University, USA

Champalimaud Centre for the Unknown, Portugal

The Champalimaud Foundation is a private, non-profit organization, established in 2005 and dedicated to research excellence in biomedical science. Completed in 2010, the Champalimaud Centre for the Unknown is a state-of-the-art centre that houses the Champalimaud Clinical Centre and the Champalimaud Research, with its three parallel programs – the Champalimaud Neuroscience Programme, the Physiology and Cancer Programme, and the Experimental Clinical Research Programme.
Initially focused on a system and circuit approach to brain function and behavior, the Centre expanded to incorporate molecular and cell biological expertise. The Centre comprises 26 research groups (circa 400 researchers) leading independent curiosity-based research.

The Centre provides Facilities dedicated for Training, some in their entirety, for use by the CAJAL Advanced Neuroscience Training Programme. These include the Teaching Laboratory, a fully equipped open lab space for 20-30 students that can be dynamically reconfigured to support a full range of neuroscience courses. It also overlooks, via floor to ceiling windows, a tropical garden and the river. The experimental spaces include: Imaging Lab: A dark-room containing a full size optical table is used for advanced imaging setups (two-photon microscopy, SPIM, etc.) and custom (course-designed) optical systems.


Fee : 2.500 € (includes tuition fee, accommodation and meals)

Pre-school fee: 400 €

The CAJAL programme offers 4 stipends per course (waived registration fee, not including travel expenses). Please apply through the course online application form. In order to identify candidates in real need of a stipend, any grant applicant is encouraged to first request funds from their lab, institution or government.

Kindly note that if you benefited from a Cajal stipend in the past, you are no longer eligible to receive this kind of funding. However other types of funding (such as partial travel grants from sponsors) might be made available after the participants selection pro- cess, depending on the course.