This is a Cajal NeuroKit course that combines online lectures about fundamentals and advanced neuroscience topics with hands-on and physical experiments.
Researchers from everywhere can participate because the course material is sent home in a kit box.
This course is now at its third edition.
Any data we collect has been shaped by the system we used to record it. Understanding the tools involved in data acquisition gives you the confidence to make informed experimental design choices, and the freedom to combine and try new approaches while building your dream setup.
In this course, we will develop your understanding of electrophysiology data acquisition. In terms of hardware, you will learn how acquisition systems can amplify tiny signals and filter out noise. You’ll test this understanding by building your own system to measure muscle and heart signals. In software, you will encounter synchronisation considerations, as we add incoming datastreams and build an increasingly complex experimental design.
Don’t be discouraged if you secretly panic at the mention of capacitance, this course starts from the very basics. Advanced students can make the final project as challenging as they like.
Designed by Open Ephys and Open Ephys Production Site, this course will have an open-source flavour and encourage you to try new ideas, share your insights, and connect with the open-source community.
What will you learn?
By the end of the course, you will:
be familiar with the electronic building blocks of acquisition systems
be able to model and build circuits to amplify and filter incoming signals
be able to use the Bonsai programming language to stream data and run closed-loop experiments with multiple datastreams
Open Ephys Production Site, PT
MIT and Open Ephys, USA
Open Ephys Production Site, PT
Guest video lecturers
– Alex Leighton, Open Ephys Production Site, PT
– Joana Neto, FCT NOVA, PT
– Jakob Voigts, Janelia Research Campus and Open Ephys, USA
-Filipe Carvalho, Open Ephys Production Site, PT
Every year we have an amazing group of Teaching Assistants who remotely help the students as they work on the course activities. Past TAs have been selected from institutes such as Champalimaud Foundation in Portugal, The Francis Crick Institute in the UK and the University of Buenos Aires in Argentina.
This course was brought to life thanks to the remarkable work of Alex Leighton as course director for the first three editions, with the vision of course director Jakob Voigts and co-director Filipe Carvalho and the help of Aarón Cuevas López (Universitat Politècnica de València, ES and Open Ephys Production Site, PT), Joana Neto (FCT NOVA, PT), Jonathan P. Newman (MIT and Open Ephys, USA) and Josh Siegle (Allen Institute, USA).
Day 1 – Introduction
What are we trying to measure? Electrical signals in the brain and ways to record them.
How can we collect these signals without changing them? Considerations when building an acquisition system.
Using a simulator to visualise electrical circuits online and make predictions about real-world circuits.
Using the breadboard and components in your kit to test your understanding of electronics concepts.
Day 2 – Impedance
Using microcontrollers to acquire physiological data.
What is impedance? Understanding how we protect our signals while measuring them.
Understanding the function and limitations of operational amplifiers.
Day 3 – Data Acquisition
Understanding Instrumentation Amplifiers.
Simulating, building and testing low & high-pass filters.
Visualise your own EMG/ECG data using the Bonsai programming language.
Day 4 – Synchronizing Datastreams
Expanding on Bonsai – controlling cameras, receiving other datastreams.
Understanding closed-loop experiments, timestamp considerations, and synchronising datastreams.
Designing student projects and group feedback on plan.
Day 5 – Project and Open-Source Neuroscience
Open Ephys – open-source hardware & software development.
An overview of open-source community projects.
Student project presentation.
The course will be held from 14:00 to 18:00 GMT.
Registration fee: 500€ per person (includes shipping of the course kit, pre-recorded and live lectures before and during the course, full attendance to the course, and course certificate).
Registration fee for a group: 500€ for one person and one course kit + 150€ per additional person (without the course kit). For this course, groups can be up to 3 persons maximum sharing 1 single kit.